How would our partnership structure a loan repayment for a property in which was purchased but needs the loan for renovations?

You might be able to get away with a covered structure (like a carport) that is not enclosed.

Based on a 2/1 lets assume about 800 sq ft home, with cosmetic and mechanical renovations needed I would figure at least 40k, could be a lot more especially if there are structural issues, roof, driveway, windows, etc needed.  2.

Hi BP community,New investor looking for some help creatively structuring a partnership.

I plan to have a structural engineer inspect and make a plan.

Although I understand the moratorium is currently scheduled to end on June 30th in many parts of the state there is always the possibility that it could be extended or re-instituted at some point.Has anyone found a way to structure lease agreements for new tenants in such a way that the tenants waive their right to the eviction moratorium or would otherwise be held responsible for unpaid rents during the pandemic (other than rent relief assistance)?

As far as the property tax implication goes, you're talking about two attached structures, therefore should be one parcel- not having two sperate tax bills it seems. 

If this hasn't been structured properly, you will end up with an adverse tax effect. 

is there any legal structure can that protect me in this worst case scenario?

Depends how you structure it.