I told him I was going to send him a copy of the invoice from the person that did the work and the pictures before he moved in and pictures of how he left he property.Any advice?

The total was $1785 (I believe this may have included registered agent fees and address forwarding, and I need to review my invoice for if this covered state filing fees, but I think not).

Asking for leases, rent roll, applications of current tenants, maintenance/repair requests/invoices.

I save invoices from service providers like contractors, plumbers, etc.

Or you can just use any online invoicing software if need be. 

It might be better to just email a copy of the bill to the tenant so you can keep track of invoices/payments.

Any interruption of Tenant’s use and enjoyment of such appliances shall not constitute “constructive eviction,” nor form the basis for any defense, set-off or counter claim by Tenant.Tenant agrees to pay as additional rent an amount of no less than $200 per visit or the actual cost of service invoiced by a third party plus $50, whichever is greater, if a tenant-initiated service visit is performed and the request is deemed to be frivolous or without merit.Charges for service/repairs performed where the tenant has been determined to be liable/at-fault for such charges by [Landlord/PM] shall be due and payable in full upon the next rent due date as additional rent.No smoking is permitted on the premises, including outdoors within the property's limits.

Do you have receipts, bills, invoices?

When the new deposit is made, you can then match it to the open invoice. 

Would it be possible to electronically invoice him using Square?